DreALTD0023259-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35290469-35297756:-
Coord C1 exon
chr1:35297579-35297756
Coord A exon
chr1:35297570-35297578
Coord C2 exon
chr1:35290469-35290519
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
GAGGTCATTCTGTTCTGCAGGGT
3' ss Score
6.44
Exon sequences
Seq C1 exon
GCTTTGAATGCGTCTTCTGCAACTTTGTGTGTAAAACCCGACCCATGTACGAGCGGCACCTACAGATCCACCTGATCACGCGCATGTTTGAGTGTGACGTCTGCCACAAGTTCATGAAGACGCCCGAGCAGCTCCTGGAGCACAAGAAGTGCCACACCGTCCCCGCTGGAGGGCTCAA
Seq A exon
GTAAGGAAA
Seq C2 exon
GGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-15-17,16-17,17-17-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTCATGAAGACGCCCGA
R:
CCCAAAGCGCTTCACAAACC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]