DreALTA0033623-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35289992-35290519:-
Coord C1 exon
chr1:35290469-35290519
Coord A exon
NA
Coord C2 exon
chr1:35289992-35290092
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGCATCTACTCCACCAACAGGCC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAAT
Seq A exon
NA
Seq C2 exon
GCCAGCCGCCATGGAGGGCCACCTGAAGACACACTACAAGATGGAGTATCGCTGCCGCATCTGCCAAGCTGTGTGGGCCAATCAGGCAGAGCTGGAAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-18-19,18-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGCAGATGAAAGGTGC
R:
TTTCCAGCTCTGCCTGATTGG
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]