DreEX0088317 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35285840-35297756:-
Coord C1 exon
chr1:35297579-35297756
Coord A exon
chr1:35290469-35290519
Coord C2 exon
chr1:35285840-35290122
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAGGTCATTCTGTTCTGCAGGGT
3' ss Score
6.44
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCTTTGAATGCGTCTTCTGCAACTTTGTGTGTAAAACCCGACCCATGTACGAGCGGCACCTACAGATCCACCTGATCACGCGCATGTTTGAGTGTGACGTCTGCCACAAGTTCATGAAGACGCCCGAGCAGCTCCTGGAGCACAAGAAGTGCCACACCGTCCCCGCTGGAGGGCTCAA
Seq A exon
GGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAAT
Seq C2 exon
GTGCCCTCTCTGCATCTACTCCACCAACAGGCCAGCCGCCATGGAGGGCCACCTGAAGACACACTACAAGATGGAGTATCGCTGCCGCATCTGCCAAGCTGTGTGGGCCAATCAGGCAGAGCTGGAAAGGCACACGCGCGCTCACCGCCTGGGCAACCACTATAAGTGTGAGCAGTGCGGCTACCTCTCCAAAACAGCCAACAAGCTCATCGAGCATGTGCGCGTGCACACCGGCGAGCGGCCTTTCCACTGCGACCGCTGCAGCTACAGCTGCAAACGCAAGGACAATCTCAACCTCCACAAGCGGCTCAAGCACGCACCGAGACAGACCTTCGGTTGCGCCCAGTGCCCATTCACCACCACTCATCCGTTCGTCTACAGCCGCCATGTCAAAAAGCACCAAGGCGGGGAGGGAAGCGCCGAGGAAGGCGAGGCTCGGCCAGGTACGCCCCATCCGGGCCTTCTGGAGCGAGGTGGGAGCAGCAGCGGGAGCGGGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACGCGCATGTTTGAGT
R:
GCCTGTTGGTGGAGTAGATGC
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]