GgaALTD0004574-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38463515-38470911:-
Coord C1 exon
chr2:38470762-38470911
Coord A exon
NA
Coord C2 exon
chr2:38463515-38463630
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGA
5' ss Score
1.39
3' ss Seq
TCTTCTTTATTTGAATTTAGGGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAG
Seq A exon
NA
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-11-13,12-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.790
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(23.5=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATCGGATTCCCTTGGT
R:
CTTCCACCTGTCCCAGTACCT
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]