GgaALTD0004578-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38440455-38442424:-
Coord C1 exon
chr2:38442324-38442424
Coord A exon
chr2:38442046-38442323
Coord C2 exon
chr2:38440455-38440562
Length
278 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
3' ss Seq
AAAGTATGTTTGTTCTTTAGCGT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GAAGCAGAGAGAATGCTTCAGACGGAAGACAACGAAAGTGTACACCTCCAGTATGGAGAAGGAAATGTTTTGAATTTTCCTGTAAAAACTCTAAAATACAG
Seq A exon
GTATAATAAGATGTCCATCTTCTAAGAACTATTTCTATCAAATGCCATAATTTACTTCATATTCAATTGGTCATGTATGAGCTTAATTTTTTCCCCCAAGCTGGTAACTCAGCCTTGATTAGCAAGTTTAAAAGCATATCCCATGGTGCTATGGTGGTGGGTTTTTTTTTTTTTTTTTTTGGTGGAAACATCTTTAATTATAAATTTACGTGACCATCTTGAACAGATCTGATGACTCAATTTCAACCAGCTGTTCTCAAGGTGAAGAAGCTTCCTTG
Seq C2 exon
CGTTGATCCCTCAGTTGTAAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCTCTGTCCATGAGTACTGAGAATGCCAAAGTAACCAGAGCTAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-47-45,48-45,49-45-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.216
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGAATGCTTCAGACGG
R:
CAGGTTAGCTCTGGTTACTTTGGC
Band lengths:
204-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]