GgaEX1053611 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38438909-38440718:-
Coord C1 exon
chr2:38440701-38440718
Coord A exon
chr2:38440455-38440562
Coord C2 exon
chr2:38438909-38439221
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTATGTTTGTTCTTTAGCGT
3' ss Score
6.41
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
TTTAAAGTTTTTGTTCAG
Seq A exon
CGTTGATCCCTCAGTTGTAAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCTCTGTCCATGAGTACTGAGAATGCCAAAGTAACCAGAGCTAACCTGAG
Seq C2 exon
CCCTGAGAAACCAGAAAGTGTGAAAATAAATGTGGAAGATTCACCTGTTGTGAAATACGTGGATGCTGAAACATCTTTATAGAACTGAAACAGGGAATTGTGTGTATTTGTGTGTGTGTATATACATCATTGTAGGATATTCTACCATTGAAGTGTGATTTCCAATGTAAGGAGTAACATGTATTTAATTCTGCCATTGTTTAGGGAACTGTAGATATGCTGACATGAGAAGATTTTCCTGCAGATCATTTGAGTGGTAATCACACTTCAGCTATTTATTTTATTGGGAATTTTATTTTCATTTTAAATAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'50-46,'50-45,51-46=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]