HsaEX0059842 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27414214-27424741:-
Coord C1 exon
chr3:27424644-27424741
Coord A exon
chr3:27420740-27420847
Coord C2 exon
chr3:27414214-27418336
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTATTTGTTCTTCAGTGT
3' ss Score
5.65
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCACCTTCCATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAG
Seq A exon
TGTTGATCCCTCAATTGTTAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACCAGATCTAACATGAG
Seq C2 exon
TCCTGATAAACCTGTGAGTGTGAAAATAAGTTTTGAAGATGAACCAAGAAAGAAATACGTGGATGCTGAAACTTCATTATAGAATTGAACCAAGAGGCATTATACATATAGATATATACATATGTAATGTGTGCGTATCATGTCACTATATATAAGAATATTGTATGTCATGCTGTTTATGTGTGACTACCGGGTTTTTAAAAGTAGTGTCTGGAGTTTGTAATGAGCACCGTGGAGACTATGTATTTAATGAAATGCTCTCTTTGAAGTGAGGTACATGGTTCTTAACTATTCAAATATTTATTCTGTTAGAAAAAAAAATTTTCTGTTTTGCAATAGAAGGATGTGGAGAAATGCTTTCAGTCTACTTTTCTTAAATCTCTGTTCATCAGTGGCAATTCGTAAAAACCTTAAGTGATACTTTGTTTATATGTTTATAATTTTTAGGTGTTTCCTGAAATTTTCACATATTATTTCACTTTTGTTAGTGCTTTATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.351 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGGAAGTCTCTTGCA
R:
CCCGGTAGTCACACATAAACAGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)