DreEX0073102 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42789489-42796758:-
Coord C1 exon
chr16:42796664-42796758
Coord A exon
chr16:42792235-42792339
Coord C2 exon
chr16:42789489-42789573
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGATGTGTGTTTTCTGCAGCAC
3' ss Score
9.78
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GAAGCACAGCGCATGATGGAGGCAGAAGAAGAAATAGAAATCCCCTTTGACGGTGGTGACCAGCTGGAAATTCCTGAGAAAACCATTCAAATCAG
Seq A exon
CACTGACCCGTCTGTGGTTAACATTTCTGATGAGATGGCCAAAACCGCTGCGTGGAAAGGTGGCAACAGCTCTGAGTCTGCAACACTATTGAAAGCTAGTGCCAG
Seq C2 exon
TGAGGAGAAGACGGCCTGCATTAAGATCCGTGTGGAAGACGAGGATGAAGAGGACAAGCGTGTGGATACAGAGACATCTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.333 C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000112879fB6096
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACAGCGCATGATGGAG
R:
GTCTCTGTATCCACACGCTTGT
Band lengths:
170-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]