RnoEX0082866 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11836407-11840617:-
Coord C1 exon
chr15:11840520-11840617
Coord A exon
chr15:11838452-11838559
Coord C2 exon
chr15:11836407-11836566
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTATTTGTTCTTCAGTAT
3' ss Score
4.74
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GAAGCTGAGCGGATGCTTCAGGGTGACGGGGATACTGTGCACCTCCCATTCGAAAGGGGGAGTCTCCTACAAATTCCAGTTAAGACCCTAAAATATAG
Seq A exon
TATTGACCCTTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCCCAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACCAGACCTAACATGAG
Seq C2 exon
CCCTGAAAAGCCTGTGAGTGTGACAATAAATTTCGAAGATGAACCATCAAAAAAATACATGGATGCTGAAACTTCATTGTAAAGTCAAACCAAAAGGAATATATAGAGATATATGCCTATCTGTGTGTATGCACAAACACACACACACACACACACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.405 C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGGTGACGGGGATACT
R:
TGTGTGTGTGTGTGTGTGTGT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]