HsaEX0059842 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27372723-27383250:-
Coord C1 exon
chr3:27383153-27383250
Coord A exon
chr3:27379249-27379356
Coord C2 exon
chr3:27372723-27376845
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTATTTGTTCTTCAGTGT
3' ss Score
5.65
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCACCTTCCATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAG
Seq A exon
TGTTGATCCCTCAATTGTTAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACCAGATCTAACATGAG
Seq C2 exon
TCCTGATAAACCTGTGAGTGTGAAAATAAGTTTTGAAGATGAACCAAGAAAGAAATACGTGGATGCTGAAACTTCATTATAGAATTGAACCAAGAGGCATTATACATATAGATATATACATATGTAATGTGTGCGTATCATGTCACTATATATAAGAATATTGTATGTCATGCTGTTTATGTGTGACTACCGGGTTTTTAAAAGTAGTGTCTGGAGTTTGTAATGAGCACCGTGGAGACTATGTATTTAATGAAATGCTCTCTTTGAAGTGAGGTACATGGTTCTTAACTATTCAAATATTTATTCTGTTAGAAAAAAAAATTTTCTGTTTTGCAATAGAAGGATGTGGAGAAATGCTTTCAGTCTACTTTTCTTAAATCTCTGTTCATCAGTGGCAATTCGTAAAAACCTTAAGTGATACTTTGTTTATATGTTTATAATTTTTAGGTGTTTCCTGAAATTTTCACATATTATTTCACTTTTGTTAGTGCTTTATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.281 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGGAAGTCTCTTGCA
R:
CCCGGTAGTCACACATAAACAGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development