BtaEX0033352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1746286-1758702:-
Coord C1 exon
chr22:1758605-1758702
Coord A exon
chr22:1752382-1752489
Coord C2 exon
chr22:1746286-1750504
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTGTTTGTTCTTCAGTGT
3' ss Score
7.08
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GAAGCTGAACGAATGCTCCAAGCTGGTGAAGACACTGTGCACCTTCCATTTGAAGGGGGAAGCCTCCTGCAGATTCCAGTAAAGGCGCTAAAATACAG
Seq A exon
TGTTGATCCCTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCACTGTCCATGAACACTGAGAATGCCAAAGTAACCAGACCTAACACGAG
Seq C2 exon
CCCTGAAAAACCTGTAAGTGTGAAAATAAATTTTGAAGATGAACCAAGAAAGAAATACCTGGATGCTGAAACTTCATTATAGATTTGAACCAAGAAGAATTATATACAGATAGATTAGATACATATACATATATGTGTGTGTATATATAATGTGTGTGTTTTGTGTTGCTATATATAACAATATTGTATGTCATGCCCCTTATGCGTGACTACTGGGTTTTTGGGTTTTTTTTTTTTGAAGTAGTGTCTGAAGTTTGTTAGGAGCACCATGGAGACTGTGTTTATAATGAAATGGTCTCTTGGAAGTGAGGTACATGGTTCTTACTAATCAAATATTTATTTTTCTGTTGGAAGTTTTTTTTCTGTTCTGCAGTAGAAAAATGTGGGAAAATGCATTCAGTCTACTTTTCTTTAAATCTGTTCTTTAAAAAAAATAATCTTTAAATCTATTTAAATCAGTGGCAGTTCATACCAACCTTAAGTGATATGTGTTTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.405 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000065868fB6524
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATTCCAGTAAAGGCGCT
R:
CAGTAGTCACGCATAAGGGGC
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development