GgaEX1053611 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39023202-39025860:-
Coord C1 exon
chr2:39025760-39025860
Coord A exon
chr2:39023891-39023998
Coord C2 exon
chr2:39023202-39023300
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTATGTTTGTTCTTTAGCGT
3' ss Score
6.41
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GAAGCAGAGAGAATGCTTCAGACGGAAGACAACGAAAGTGTACACCTCCAGTATGGAGAAGGAAATGTTTTGAATTTTCCTGTAAAAACTCTAAAATACAG
Seq A exon
CGTTGATCCCTCAGTTGTAAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCTCTGTCCATGAGTACTGAGAATGCCAAAGTAACCAGAGCTAACCTGAG
Seq C2 exon
CCCTGAGAAACCAGAAAGTGTGAAAATAAATGTGGAAGATTCACCTGTTGTGAAATACGTGGATGCTGAAACATCTTTATAGAACTGAAACAGGGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX1-11/12=9-12
Average complexity
S
Mappability confidence:
92%=92=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.216 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGAATGCTTCAGACGG
R:
TCCCTGTTTCAGTTCTATAAAGATGT
Band lengths:
194-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]