GgaINT0101763 @ galGal4
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39023202-39023998:-
Coord C1 exon
chr2:39023891-39023998
Coord A exon
chr2:39023301-39023890
Coord C2 exon
chr2:39023202-39023300
Length
590 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
ATCATCTTTGCTTTCAACAGCCC
3' ss Score
8.4
Exon sequences
Seq C1 exon
CGTTGATCCCTCAGTTGTAAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCTCTGTCCATGAGTACTGAGAATGCCAAAGTAACCAGAGCTAACCTGAG
Seq A exon
GTAGCTATAATTACTCACGTTTTCTAACTTTTGTCATGTCTTTGGTAGCTAACTACTGTACTCATATTTATTGAAATTTATATCAGGTAGCAAGCATACATGGTTTATAAATGGGCTTTTCACTTGCAAGGAGCTTGATTTTGAGCTTAATTTTTGCTCTCTGCTCTGAAATCAAACAATGTCTAAGGACATTGTTAAGTGCATTATTTCTATTTTAATGCCACTTCTAATTTGCTTAATACGGTTGTATGTTACTCTGATGGGTTTAAGGGATCTAAAACCTTTATTAGAGTGTATATGAGCATGGGAATTGTTTGGTCCTGAATATTACAAATGCCAGTGAGAATAAAAGGTAAGTACATTTTCACTGCTGCTTGGATCTTCCACTGGGTTGGTGGGTTTGAATATTTGCCCAACTTAGTTTAGATTTCTAAAAATTAAATTGGCTCAGATGGTATTCTTATTGGATATGAAATATACTTGAAGTACTGTCTTGACTCTTGAGTATAAAATGTTTGATGGCTAGCTTTGAGAGAAATGAACAGTATCTTGAATGAAATATCTTAAATGATCATCTTTGCTTTCAACAG
Seq C2 exon
CCCTGAGAAACCAGAAAGTGTGAAAATAAATGTGGAAGATTCACCTGTTGTGAAATACGTGGATGCTGAAACATCTTTATAGAACTGAAACAGGGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGATCCCTCAGTTGTAAACA
R:
TCCCTGTTTCAGTTCTATAAAGATGT
Band lengths:
204-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]