GgaINT0101763 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38438909-38440562:-
Coord C1 exon
chr2:38440455-38440562
Coord A exon
chr2:38439222-38440454
Coord C2 exon
chr2:38438909-38439221
Length
1233 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
ATCATCTTTGCTTTCAACAGCCC
3' ss Score
8.4
Exon sequences
Seq C1 exon
CGTTGATCCCTCAGTTGTAAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCTCTGTCCATGAGTACTGAGAATGCCAAAGTAACCAGAGCTAACCTGAG
Seq A exon
GTAGCTATAATTACTCACGTTTTCTAACTTTTGTCATGTCTTTGGTAGCTAACTACTGTACTCATATTTATTGAAATTTATATCAGGTAGCAAGCATACATGGTTTATAAATGGGCTTTTCACTTGCAAGGAGCTTGATTTTGAGCTTAATTTTTGCTCTCTGCTCTGAAATCAAACAATGTCTAAGGACATTGTTAAGTGCATTATTTCTATTTTAATGCCACTTCTAATTTGCTTAATACGGTTGTATTTACTCTGATGGTTAAGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGTGCATTATTTCTATTTTTAATGTCCACATCTTAATATTGTGCTAATATACGGTGTGTATGTGACTTCTGAGAGGGTTATAAGGGATCTAAAACCTTTATTAGAGTGTATATGAGCATGGGAATTGTTTGGTCCTGAATATTACAAATGCCAGTGAGAATAAAAGGTAAGTACATTTTCACTGCTGCTTGGATCTTCCACTGGGTTGGTGGGTTTGAATATTTGCCCAACTTAGTTTAGATTTCTAAAAATTAAATTGGCTCAGATGGTATTCTTATTGGATATGAAATATACTTGAAGTACTGTCTTGACTCTTGAGTATAAAATGTTTGATGGCTAGCTTTGAGAGAAATGAACAGTATCTTGAATGAAATATCTTAAATGATCATCTTTGCTTTCAACAG
Seq C2 exon
CCCTGAGAAACCAGAAAGTGTGAAAATAAATGTGGAAGATTCACCTGTTGTGAAATACGTGGATGCTGAAACATCTTTATAGAACTGAAACAGGGAATTGTGTGTATTTGTGTGTGTGTATATACATCATTGTAGGATATTCTACCATTGAAGTGTGATTTCCAATGTAAGGAGTAACATGTATTTAATTCTGCCATTGTTTAGGGAACTGTAGATATGCTGACATGAGAAGATTTTCCTGCAGATCATTTGAGTGGTAATCACACTTCAGCTATTTATTTTATTGGGAATTTTATTTTCATTTTAAATAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACTGCACAGTGGAAGGC
R:
AGCTGAAGTGTGATTACCACTCA
Band lengths:
342-1575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]