DreINT0151600 @ danRer10
Intron Retention
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42789489-42792339:-
Coord C1 exon
chr16:42792235-42792339
Coord A exon
chr16:42789574-42792234
Coord C2 exon
chr16:42789489-42789573
Length
2661 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
AGCTGTCCTTTGTTTTACAGTGA
3' ss Score
8.21
Exon sequences
Seq C1 exon
CACTGACCCGTCTGTGGTTAACATTTCTGATGAGATGGCCAAAACCGCTGCGTGGAAAGGTGGCAACAGCTCTGAGTCTGCAACACTATTGAAAGCTAGTGCCAG
Seq A exon
GTAGCTGATGTTCCTCTAACCAGCCGCCTGCTGTTCAACTCTTTTTCTCACATTATAACTCTCGCTGCTTTCTGTCATTGCTTCAGCGCTCGGCCTGATTTTCTGCTCATACATAAAGCTGTCCGGAAGACTTTTCAAGCTGTTTTTCTTTTTTAAGTATGAAAAACACATGGAGCTTATTTAATGAGGGAAGCTTATGATATTCAGGCATTGGTCAGTATATTCTCAAGGTGTGCACACCTCCATTGGAAATAACGAACTTACACACGGAAAAGATGCGATTTGTGAACAGCCACCATTTGCGAATTCCAGCAGTTGATTATCCTCTTGCACTGACATGCTGGATTCATCTGATTTGTTGACAAATGGGTTGCGAATCCATTCCTTGGCAGTTCGCCGGTACGTCATGGGGCATTTCCACTTCCCAAAGAAACTTTTCAAAGATGTCTGTTTCTTACTCGTTTGCTAGCTTGTGGGTGAAATTTTGGTGCTCAAGTGACCGAATAAGGTCGTTTTTCAAAATAAAGAATCATTCAGACTCGGATAATAATAAAACAAAAATAATTGATGATTTCTTGTGCGGCCCGGTACCAATTGATCCACGGACCGATAGCGGCCTGGGGGTTGGGGACTGTTTTATGATATGTCAATTAAAAGTTACTGTTGGTAAAAATTAAAAATTGAATAGCAAATATTACCTTTAAAGAATGAAGACTGATTAAAATGTGCATCTCTTGAAATGTTGGGCAAACTAATATTCAGTAATATAAAATTACTAATATAAAAGTGGAAAATGTTAGTACTGTAGGCAATGGACTAGGCATGAGCCCCTTCAAGATTCTGACAGTATAACCTTGGATATAAATATCACGGTATTGTGATTACTGCTCTAAAATCTATTTTTTAAATGTCTGGGTAAACAAAACCTTTTTTTCCCTTTGTACACAATATATTTTATAATTTTAGAAACATTTCAAATATATTTGGAGCAGTAAACATGTCAGACTGAATAATTGAAATGAATAATTCTGCTTCTGCTGTCTTTGTTTCAAAACACAGATTTTTTTTTTTTTTTTTTTTACAATTTAAAACGGCATCTTTTTCTGGAGATACTGTTGTCCTGAAAAAAAAATGTAAATAAAAATTCTTAACCATACCTTAGGAACAATTTAGCAGAACATTTTGACGGTTTTAAAACCTTGACTTTTCCAAACCGCGGTATACCTTGAACAAATCGTCCCATGCCTACAATGGCCCAATATCCATATCTGAATTGTATATAAGTTTTTGTTATAAATGTTATCAGCGCATCTGTAAGCACATTAGAATGATTTATGATGCTCAGGTGACGCTGAAGACTGTAGTAATGATGCTGAACATTCAATATTGCATCACTGAGATAAATTACAGTATATTTTAAAGTCAATTAAAAATAGAAAACAGATATTTTGAATTCAAAAATATTTGCAGTATTAGTTTTCGCTGCATTTTGGATCAAATGAATGCTGGCAAATGCATAGAGACAAAAACTAAGAATTAGGATTTCAACATCTCCTACAGTAGTCATTTTAATCATTGTGTTTTTATTTTTATTCACAGGAGTTACATTCTAAAAATAACTCGCAATAGTGGAAATCTGCAAAGTAGTCAGCTTTATTTTTGACAATTATTATAGATGTTTTAAGGCTGTAAAACCCCTCACTACACACTTTATACACTTTTCCCAGACAGGCATTAACATTTTCACACTTTTCTCTCGTTTAAACACTCTCAGATTTCAAACTTTTGATGAAAAATAACATCCATCGCTTTCTGCAAAAGATTAAGAAAGCTTTATAGCTTTTGTGTGGATAATGTTGGCATCTTGCGTATTGTTCTTTCTCCTGCAGTCACTGATCCACAAAGCTGAAGCAGACTCCATCCTTAAAGGGGTTGTACTCCGGATGCACCACGCACATGACAGTTGGAAGTAACACACGCTGGACACCCACATTTGCATGTTATTTAAAATGAAATTATTCAGATGGCGCTCTGTGGCATGGCAGAAATATGAACTGTGTTCCGAGTCGTAGCTGGGCACTGCTGACTTGCAGCGCCGGTGTGTGTACCTTGACCTAAACCTTTGTTTACAATTCTAAAATGCATTGCGGTGTGTGGCGCAGCACATCTGGTGAGCGACCCCCTTTACGATGGTTTTGCGGCAGACAGTTACAATCCTTTTGCATTCTTATTGAAACTCACACTGCTAGCAATCGAAGATTTTAATCTGGCAAGCTGAACGCATTCTATACTGTACAGGAGACACAGAGGAGATTTATTGACAGTGGTCTACAGCCAATCAGGATGCAGAACGTAATGTGCTGTTAAAAAAACATGTCAGATTGCACCAAAAAAAATCAGCAACACTTGAATCAGGTGAACCGCACTATAGCGAGGGAATACTGTATTGCATAAAAAACACCAAAACATTTAAGCTTTTTACGTGTCGTTTCGATGCACTTGTCTCCTGGTGTTTATGATGCTTGTGAAATGGGTGTGCTGGATCTGCTTATGCACATTTCTGATGTGTGATGTCATTAAATGTTGCTAATACCTTTTAGAAAAAGGCAGACTTGAAAAGCTGTGAGTGAATCTGGCCTTCAGCTGTCCTTTGTTTTACAG
Seq C2 exon
TGAGGAGAAGACGGCCTGCATTAAGATCCGTGTGGAAGACGAGGATGAAGAGGACAAGCGTGTGGATACAGAGACATCTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952:ENSDART00000112879:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]