MmuEX0043429 @ mm10
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14791067-14799943:+
Coord C1 exon
chr14:14791067-14791164
Coord A exon
chr14:14793950-14794057
Coord C2 exon
chr14:14796077-14799943
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTATTTGTTCTTCAGTAT
3' ss Score
4.74
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GAAGCTGAACGGATGCTTCAGGATGATGAGGACACTGTGCACCTCCCATTCGAAAGAGGGAGTCTCCTGCAGATTCCAGTGAAAACTCTAAAATATAG
Seq A exon
TATTGACCCTTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCCCAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACGAGACCTAACACGAG
Seq C2 exon
CCCTGAAAAGCCTGTGAGTGTGACAATAAATTTCGAAGATGAACCGTCAAAAAAATACATGGATGCTGAAACTTCATTGTAAAGTCAAACCAAAAGGAATATATAGAGATATATGCCTATCTGTATATATACACATATATATGTATAAAAAGCACATGTGCCATGCCATTATGTATAACAGTACTTTGGGGCTTTTTCAAGTAGCGTCAGATATTTGTTGTGGACACCATAGAGACTACATTAATTAAGTGCTCTCTTAGAAGCAAGGTTCATGAATTTTTACTCCAGATTTTTTTGGGGGGTGGGGTAAAGCCTTTCTGTTATGCAATAGAAAGATGTGGAGCACTGCGTTCCATCTGCTTTTCTTTGATCTGTCAGTGGCAATCAATCATAACAATCTTAAGTCTACATACTTAAAATTCGACCTGAATTTCAAAAGATGTTTGTTTTCCCTTTTGGTAGTGTTTATAGGTAGAATAAGGAGTCTGCCCATGTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.405 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAGAGGGAGTCTCCTGC
R:
ACGCTACTTGAAAAAGCCCCA
Band lengths:
256-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types