GgaALTD0004993-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32730047-32761285:-
Coord C1 exon
chr7:32761124-32761285
Coord A exon
chr7:32761120-32761123
Coord C2 exon
chr7:32730047-32730257
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACA
5' ss Score
6.25
3' ss Seq
TTCTCTGTTGTCTTTTTCAGATT
3' ss Score
14.07
Exon sequences
Seq C1 exon
GCTTAAGAACATCATTACAATTGGGAAAATTACACTCTGTCATCTATCAGTTGGATTGAAGCAGAGCAGAGATCGCCACTGAGATCCATAGAGGAGATCCCCAACCTGCTTTGTGGAAGGCACATAAAGCAGCGCAGCCTGGTACTGCTCCCCATTTTGGAT
Seq A exon
GTAG
Seq C2 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-15-5,16-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(67.4=98.4),PF091806=ProRS-C_1=WD(100=50.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCCCCAACCTGCTTTG
R:
CTTCCCACTGCTTCAGCTCTG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]