GgaEX1027680 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32730047-32761285:-
Coord C1 exon
chr7:32761124-32761285
Coord A exon
chr7:32746627-32746712
Coord C2 exon
chr7:32730047-32730257
Length
86 bp
Sequences
Splice sites
3' ss Seq
TATAATGCTTTCTATTACAGAAT
3' ss Score
9.53
5' ss Seq
GTGGCAAGT
5' ss Score
2.6
Exon sequences
Seq C1 exon
GCTTAAGAACATCATTACAATTGGGAAAATTACACTCTGTCATCTATCAGTTGGATTGAAGCAGAGCAGAGATCGCCACTGAGATCCATAGAGGAGATCCCCAACCTGCTTTGTGGAAGGCACATAAAGCAGCGCAGCCTGGTACTGCTCCCCATTTTGGAT
Seq A exon
AATCTGCTCTGCGAAGGATATCAGCTGATTTTTCTCTAGGTTTGGACTCTGTGCAACCACAAGTCAGGCCAGTACCTCCAAGTGTG
Seq C2 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX2-3/3=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(67.4=98.4),PF091806=ProRS-C_1=WD(100=50.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGATCGCCACTGAGAT
R:
GGGAACCGCCATAAAAAGCCT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]