GgaALTD0005387-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62745651-62746557:-
Coord C1 exon
chr4:62746414-62746557
Coord A exon
chr4:62746197-62746413
Coord C2 exon
chr4:62745651-62745731
Length
217 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCCTGTCCCTTGTTTTCCAGCTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGTTGCAGTCCAAGTGCTCTGCAAGCCAGACTTAAAGTAGCTGCTCATGAAGCTGAAGAGGAATCTGACACTATTGCAGAAGACTTCTTGGAAGGCAAAACAGAAATAGATGACTTTCTTAGTAGCTTCATGGAAAAGAGAACG
Seq A exon
GTATATAAAATACAAGTCATTCTAATCTGAGAGTTATACAGAATATAGGTAATAAATTAAGACAGACTTTGAGCAGTGCTATGATTCAGAGGGTGCTTTAGCAAGCTCCAGAAAAAGTTTCAGTCTATTTAAAATAGAATCAGCGTTCTGGATGCATTATATTTAAGGCAAGAATGAAAAGATCTCCACCACTAAACCCCTGACTGTGCTCTTGCAG
Seq C2 exon
CTCTGCCACTGTAGACGAGCCAAAGAAGAAAAACTTCAACAGGCAATATCAATGCACAGCCAATTTCATGCTCCGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-18-15,19-15,20-15-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(31.3=100)
A:
NA
C2:
PF072008=Mod_r=PD(7.3=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGTCCAAGTGCTCTG
R:
GGAGCATGAAATTGGCTGTGC
Band lengths:
218-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]