GgaALTD0005387-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62745651-62746557:-
Coord C1 exon
chr4:62746414-62746557
Coord A exon
NA
Coord C2 exon
chr4:62745651-62745731
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTATAT
5' ss Score
6.07
3' ss Seq
TCCTGTCCCTTGTTTTCCAGCTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGTTGCAGTCCAAGTGCTCTGCAAGCCAGACTTAAAGTAGCTGCTCATGAAGCTGAAGAGGAATCTGACACTATTGCAGAAGACTTCTTGGAAGGCAAAACAGAAATAGATGACTTTCTTAGTAGCTTCATGGAAAAGAGAACG
Seq A exon
NA
Seq C2 exon
CTCTGCCACTGTAGACGAGCCAAAGAAGAAAAACTTCAACAGGCAATATCAATGCACAGCCAATTTCATGCTCCGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-18-15,19-15,20-15-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(31.3=100)
A:
NA
C2:
PF072008=Mod_r=PD(7.3=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACTTAAAGTAGCTGCTCA
R:
CTTTGGCTCGTCTACAGTGGC
Band lengths:
145-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]