DreALTD0021974-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15784657-15786696:+
Coord C1 exon
chr1:15784657-15784800
Coord A exon
NA
Coord C2 exon
chr1:15786598-15786696
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTATTA
5' ss Score
4.15
3' ss Seq
TTTTCAACAATTTCTTTTAGCTA
3' ss Score
5.9
Exon sequences
Seq C1 exon
AGCTGCAGTTTGAGTGCGTTGCAGGCCAGATTAAAGGTAGCAGCCCATCAGGCTGAAGAAGAATCTGAGGAGACTGCAGAGAACTTTCTGGAAGGAAAAACAGAGATCGACGACTTCCTAGCCAGCTTTATGGAAAAGAGAACG
Seq A exon
NA
Seq C2 exon
CTATGTCATAGCAGAAGAGCCAAAGAGGAGAAACTCCAGCAATGTATGAACACACACGGACAGTTTCCCGCCACACTTTAGATTTAATATCCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119-14-10,15-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(31.3=100)
A:
NA
C2:
PF072008=Mod_r=PD(7.3=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTTTGAGTGCGTTG
R:
GGGATATTAAATCTAAAGTGTGGCGG
Band lengths:
236-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]