MmuALTD1018953-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031600 | Vps37a
Description
vacuolar protein sorting 37A [Source:MGI Symbol;Acc:MGI:1261835]
Coordinates
chr8:40543810-40545024:+
Coord C1 exon
chr8:40543810-40543953
Coord A exon
NA
Coord C2 exon
chr8:40544944-40545024
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
TTAAATAATTTATCTTCTAGATT
3' ss Score
8.29
Exon sequences
Seq C1 exon
AGTTGTAGTGCAAGTGCTCTACAGGCAAGATTGAAAGTAGCTGCACACGAAGCTGAGGAAGAATCGGATAATATTGCTGAAGACTTCTTGGAGGGAAAAACTGAAATAGATGATTTTCTCAATAGCTTCAAGGAAAAGAGAACA
Seq A exon
NA
Seq C2 exon
ATTTGCCACTGTAGAAGAGCTAAAGAAGAGAAGCTTCACCAGGTGATAGCGATGCACAGCCAATTTCATGCTCCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031600-23-27,24-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(31.3=100)
A:
NA
C2:
PF072008=Mod_r=PD(7.3=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGACTTCTTGGAGGGA
R:
GGAGCATGAAATTGGCTGTGC
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types