GgaALTD0006005-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82779291-82795761:+
Coord C1 exon
chr4:82779291-82779391
Coord A exon
NA
Coord C2 exon
chr4:82795624-82795761
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
ATGTTTATTTTTGATTTTAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
TGATGTTGTTTGTGTGTGGATACGTAATATCACAACTTATCCTTTTTTCCTCTTTATAGGTCCTGCTGGGGACTTGCATCTGGCCTCAATGTGAAATTAAG
Seq A exon
NA
Seq C2 exon
GAGAATGACATCTTCCTGGGCTGGGAAAAAGGAGCTTACAAAAAATGGGGAAAGAGTAAGAAAAAGTGTTCTGATCTAACACTAGAGGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGCTCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(4.2=64.3),PF144001=Transglut_i_TM=PU(13.0=14.3)
A:
NA
C2:
PF153761=DUF4603=FE(3.5=100),PF144001=Transglut_i_TM=FE(48.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGTTTGTGTGTGGATACG
R:
TCATCAGAAGCAGAGCGAAGAC
Band lengths:
238-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]