GgaALTD0006005-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82779291-82795761:+
Coord C1 exon
chr4:82779291-82779391
Coord A exon
chr4:82779392-82779853
Coord C2 exon
chr4:82795624-82795761
Length
462 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGTTTATTTTTGATTTTAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
TGATGTTGTTTGTGTGTGGATACGTAATATCACAACTTATCCTTTTTTCCTCTTTATAGGTCCTGCTGGGGACTTGCATCTGGCCTCAATGTGAAATTAAG
Seq A exon
GTAGAAAAACACATCTACATATGTGTTTGCTATTAGGATTTAGTTTATTCACTGGTCATGCCTGAAGAGTGATGTTCGTCTCTAGACGGCTAACTGCCAGGAAATATAAATGATTGTCCTAGAAGTCAAGCCTCTCTCCTATTTACTGGAGTGAAAATCACCTCCAGATATCGACGGGATATCAACTACAGAAAATGCTTCACGTTATAAGGATGCCAACCACCTAGATTCATGCGCCCTATCTGTACAGTTGTTGTGGATGGTTTGCCATCAGAAAGCTCCTCAAGCTCTTATCCAGGCCCTGTATCTGTTTCTGAAATGTCTCTGCTACATGCTTTGGGTCCAGTGCAGACCTGGCTGGGACAAGAGCTAGAGAAGTGTGGCATTGATGCCATGATTTATACTCGGTATGTCCTCAGTCTTCTGCTGCATGATAGCTATGACTACGACCTGCAGGAACAG
Seq C2 exon
GAGAATGACATCTTCCTGGGCTGGGAAAAAGGAGCTTACAAAAAATGGGGAAAGAGTAAGAAAAAGTGTTCTGATCTAACACTAGAGGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGCTCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(4.2=64.3),PF144001=Transglut_i_TM=PU(13.0=14.3)
A:
NA
C2:
PF153761=DUF4603=FE(3.5=100),PF144001=Transglut_i_TM=FE(48.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGTTTGTGTGTGGATACG
R:
TCATCAGAAGCAGAGCGAAGAC
Band lengths:
238-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]