GgaALTD0006005-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79387704-79403767:+
Coord C1 exon
chr4:79387704-79387804
Coord A exon
chr4:79387805-79387859
Coord C2 exon
chr4:79403630-79403767
Length
55 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGTTTATTTTTGATTTTAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
TCTGTTTCTGAAATGTCTCTGCTACATGCTTTGGGTCCAGTGCAGACCTGGCTGGGACAAGAGCTAGAGAAGTGTGGCATTGATGCCATGATTTATACTCG
Seq A exon
GTATGTCCTCAGTCTTCTGCTGCATGATAGCTATGACTACGACCTGCAGGAACAG
Seq C2 exon
GAGAATGACATCTTCCTGGGCTGGGAAAAAGGAGCTTACAAAAAATGGGGAAAGAGTAAGAAAAAGTGTTCTGATCTAACACTAGAGGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGCTCTGCTTCTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-1-4,2-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(4.2=70.1),PF144001=Transglut_i_TM=PU(13.0=15.6)
A:
NA
C2:
PF153761=DUF4603=FE(3.5=100),PF144001=Transglut_i_TM=FE(48.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAATGTCTCTGCTACATGCT
R:
TAAGCTCCTTTTTCCCAGCCC
Band lengths:
133-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]