Special

BtaALTD0011509-2/2 @ bosTau6

Alternative 5'ss

Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118129417-118144376:+
Coord C1 exon
chr6:118129417-118129517
Coord A exon
chr6:118129518-118129954
Coord C2 exon
chr6:118144276-118144376
Length
437 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTTTTCCTTCTTTATTCCAGCTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
TGTACATAATGCTACCTTTTTTCTCTCTTATTTTTGTAGGTTCTGCTGGAGACTTACATTTGGCCTCGATGTGAAATTAAAGTAGAACATCGTATCTAAAT
Seq A exon
GTATGTTAATATCAGGATGTTGATTCATTGGTCATGCCTGCAGAGGGAAATTCAGTTGTAGATGGCTGACTGCCAGCAGAAATAAATGTTTACCCTAGATGTCCAGCATCTCTCCTTTTTACTGGAGTGAAAATCCCCTCCAGACACCAACAGAACGTCACTGCAGAAAATGCTTCGCATCTTAAGGATGTCAGCCACCTCAGTTCATGCGCCCTGTCTGTGCAGTTGCTGTGGACGATTTACCATCTGAAAGCTCCTCCAGCTCTTACCCAGGCTCCGTATCTGTCTCTGAAATGTCTCTGCTTCATGCTCTGGGTCCCGTGCAGACCTGGCTGGGACAAGAGCTAGAGAAATGTGGCATTGATGCCATGATTTATACTCGATACGTCCTCAGTCTTCTGCTGCACGACAGCTATGACTACGACCTGCAGGAACAG
Seq C2 exon
CTCATTCATTAATTCATATCCATTTCCTGAGGGCTTACGGTAGGCCAGATATTCTTTGGAGTAGTTTTCTTAATTTGCCTTAGTCTTTCTTTCTAATCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.013 A=NA C2=NA
Domain overlap (PFAM):

C1:
PF153761=DUF4603=PU(4.2=70.1),PF144001=Transglut_i_TM=PU(13.0=15.6)
A:
NA
C2:
NA


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development