GgaALTD0007135-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:896106-897489:-
Coord C1 exon
chr17:897389-897489
Coord A exon
chr17:897131-897388
Coord C2 exon
chr17:896106-896245
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGCACGG
5' ss Score
3.12
3' ss Seq
GCCCATCTGGTGCTGTGCAGCTG
3' ss Score
6.68
Exon sequences
Seq C1 exon
TAGTAGCGGTAGAAGAGCTCCTTCCACAGGAATTCGTCGCGGGCCACGGCGCGCCACTGCCGGCACACGAGGCCCACCGCGAGCACGTCGGCGTGGTCCAG
Seq A exon
GTACAGGAAGATCTCGAAGAGCACGCTGTCCGGGAGCAGGGGGCCGCCCGCGGCCATCGTGTCATCCTGCCGCTGCACCCGCGAGCGAGCGGCGCTCAGCTCGGGCCCGGCCCGGAGACGGCGCTCACCCGGCGCCCGCCTCCCCGCCCCGCACTTCCGGCTTCACCGCCCCGCACTTCCGGCCCGGCTCCAGGAGCCGCTCTGGCCGCCCTCTCGGTGGTGTTGCCCTTCCGCCCGCGGCGCCGCTCTCCACTCCAG
Seq C2 exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006118=Lipocalin=PU(32.6=97.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCGGTAGAAGAGCTCCT
R:
CTTCCTGAAGGTGCTGATGGC
Band lengths:
238-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]