GgaEX0026938 @ galGal3
Exon Skipping
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:895471-896906:-
Coord C1 exon
chr17:896806-896906
Coord A exon
chr17:896106-896245
Coord C2 exon
chr17:895471-895541
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTGGTGCTGTGCAGCTG
3' ss Score
6.68
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGCTCCTCGGCGCGCCGCAGGGGACGGGAACAGCGGCCGCCCCCTCCCCACAGCCCTCTTGAGAAAAGTGGTGACCGAGGGGAACCTCAGCCTCGGCGAG
Seq A exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
Seq C2 exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004-'2-2,'2-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006118=Lipocalin=PU(32.6=97.8)
C2:
PF0006118=Lipocalin=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGACGGGAACAGCG
R:
CTCTCACGGAGAAGCGCCT
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]