RnoEX6015863 @ rn6
Exon Skipping
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2725534-2727616:-
Coord C1 exon
chr3:2727425-2727616
Coord A exon
chr3:2725784-2725920
Coord C2 exon
chr3:2725534-2725604
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCTCATACTCAACTTTCAGTTT
3' ss Score
8.37
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCCAACACTTCTTGAAGCACCCAGACGGTAATGTTGCACCACCTCACATTCTCCAGGGGCGCCAGACAGCAAGCACCTGAGTACTACTAGGCCAGATACAACCTGCAAGGTGGGGGTGCAGCCCCATCTTTATACCTTTCAGGTGGGGGGCCTTTGACACCTTCCCTAATGCTCCAGGGCCCAGAGAGACAT
Seq A exon
TTTGCAGGGACATGGCTCCTTGTGGCTGTGGGCTCTGCATGCCGCTTTCTTCAGGAGCAGGGACACCGGGCTGAGGCCACTACATTGCACATAGCTCCCCAGGGTGCAGCTATGGCTGCCAGCACCTTCCGAAAGCT
Seq C2 exon
AGACGGGATCTGCTGGCAGGTGCGCCAACTCTATGGAATCACAGGGGTCCCTGGCCGCTTCTTGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701-'3-1,'3-0,11-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(31.7=95.7)
C2:
PF0006118=Lipocalin=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACTTCTTGAAGCACCCA
R:
AGGGACCCCTGTGATTCCATA
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]