MmuEX6099554 @ mm10
Exon Skipping
Gene
ENSMUSG00000015083 | C8g
Description
complement component 8, gamma polypeptide [Source:MGI Symbol;Acc:MGI:88237]
Coordinates
chr2:25499589-25500613:-
Coord C1 exon
chr2:25500094-25500613
Coord A exon
chr2:25499839-25499975
Coord C2 exon
chr2:25499589-25499659
Length
137 bp
Sequences
Splice sites
3' ss Seq
CACTCATAGTCAACTTCCAGTTT
3' ss Score
0.84
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTCGAGACTCTGCCTCTGCTCTCTCTGCTGCTGGGCTTTGAACAAGTGACTTTATGAGCACGTTCTTGTTGGTTGTGGAGTTAAAGACAGTTATTGCATGCATAGGGTTGAGCACTGACCACAAGTGGAAATAGGGGTGCAGAGGTCAACTCTTAACTTTGCACTTGGGACACAATGCCCAGCTCCTATCAAGGCTAGGTTCTAGGATGGACCCTGGCTTGGGTTAGGGGTTCAGTAATCGGAAGACAGATGTGGACTTCCTGGACTGTGCTTCCTGTGGCACTGGACAGTGGACTCTGACCTAGGACAGTGCACCCCTCCACCTCGCTGTCCTGTCACCTACTGTCCGTAGCAGGTTGGCCATGCTGTCTCCAGGGGCTGTGTTGTTCTTCACCCTGCTCTTGACAGCCAGTTCGCTGGGCCAAAGGACTCGAAAGCCTATTGGGTCTACCTCCCCCATCAGCACTATCCAGGCCCAGGTCAATTTCAGTGCTCAGAAG
Seq A exon
TTTGCAGGGACATGGCTCCTGGTGGCTGTGGGCTCTTCGTGCCGCTTTCTTCAGGAGCAGGGACACCGAGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGCTGTCAGCACCTTCCGAAAGCT
Seq C2 exon
AGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015083-'2-8,'2-5,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(31.7=95.7)
C2:
PF0006118=Lipocalin=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACCTAGGACAGTGCACC
R:
AGGGACCCCTGTGTTCTCAAA
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types