GgaEX0026938 @ galGal4
Exon Skipping
Gene
ENSGALG00000024004 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr17:514511-515964:-
Coord C1 exon
chr17:515846-515964
Coord A exon
chr17:515146-515285
Coord C2 exon
chr17:514511-514581
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTGGTGCTGTGCAGCTG
3' ss Score
6.68
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CGCCCTCCTGCTCCTCTCCCTGCTTCCTCGCCGCGCCGCAGGGACGGGGACAGCGGCCGCCCCCTCCCCACAGCCCTCTTGAGAAAGTGGTGACCGAGGGGAACCTCAGCCTCGGCGAG
Seq A exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
Seq C2 exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006118=Lipocalin=PU(32.6=95.7)
C2:
PF0006118=Lipocalin=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCTCCTCTCCCTG
R:
CTCTCACGGAGAAGCGCCT
Band lengths:
187-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]