GgaALTD0007167-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1957416-1958616:+
Coord C1 exon
chr25:1957416-1957490
Coord A exon
chr25:1957491-1957709
Coord C2 exon
chr25:1958416-1958616
Length
219 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGTTATCCTCCCTTTGGCAGTGA
3' ss Score
7.74
Exon sequences
Seq C1 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAG
Seq A exon
GTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAAGTAAGTCCACTCCCAGCACCTCCACAACTCCTACTGCAACGCAGCCAACACCACTGGGACAGTTAACTGTGCAGCAGCCAGGGCAGTCCAGTCAAGCTACTAACCCCAAATTAG
Seq C2 exon
TGAGCATCGCGAGCTTTGTGACCGTAAAGAGACCCGGAGTGACTGGTGAGAACAGCAATGAGGTTGCCAAGCTGGTGAACACCCTGAATACTGTTCCCTCGTTGGGGCAGAGCCCCGGACCAATGGTGGTGTCCAACAGCAGCCCTGTGCACGGCTCCCAGAGATCCAGCACGTCGGAGTCATCATCATCGTCGTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479-4-6,5-6,6-6-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGTACACAGTTTGTCA
R:
CTTTCAACGACGATGATGATGACT
Band lengths:
276-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]