GgaINT0139834 @ galGal3
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1957416-1958616:+
Coord C1 exon
chr25:1957416-1957595
Coord A exon
chr25:1957596-1958415
Coord C2 exon
chr25:1958416-1958616
Length
820 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGTTATCCTCCCTTTGGCAGTGA
3' ss Score
7.74
Exon sequences
Seq C1 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAA
Seq A exon
GTAAGTCCACTCCCAGCACCTCCACAACTCCTACTGCAACGCAGCCAACACCACTGGGACAGTTAACTGTGCAGCAGCCAGGGCAGTCCAGTCAAGCTACTAACCCCAAATTAGGTAAGACTTGGAGAAGCAAGGGGACTCGAGTGTGTAACACTGTCTGTAATTTGCTTTTCAAACATACAGCTTAGAGCTGAAGTGCAGAAGTTGAGTCAGAGCTCCTGGGTTCTATTTTTGCTTTGGGCACTGACTCATGCTTCATCTCCCTACCAGCCTGGAAGACGACGAGCGTTGTGCCGTAGTGCTCAGTTTGCTCTGAGAACCCCCTAGATTTCATGTTTTGTAGAATGTTCTGAGACCATCAGTTAGAAGTCCCTAAAAGTGAAAAATACTATTTGTTAATCACTTATGATTTTGAAAGATAATGAGCAGGTAACAAGCAGAAACTAAGCACAGACAACTTAAAAAACCATGTATTTCTTCACGCAGCAAGTCATCACGTTGTTTTTAGCTTTAAGTGGCCTTAATCACATACAGCTACATGTTGACAAGAAATACTAGTGATTTCTGTGACCATCAGTATCTTGTTTAGTCCACTGTAGGGAAGGGCTCATGTTTTAGAGTGCGGTCTGGAAGGGAAATTTACTTGCCCAGTCTTTTTCCCTTCGCTTTGCTGGACAGAATTGATGGCTTTGGTCATCTTCAATGAAAGTGAAAGGTAGAAGAGCAAGACACGAGGCATGCAAGTGGGCGCAGCCTTCACCCAGTGCATCAGCTCTTACCAATTCTTATTAGTGCTCTTCTGTTATCCTCCCTTTGGCAG
Seq C2 exon
TGAGCATCGCGAGCTTTGTGACCGTAAAGAGACCCGGAGTGACTGGTGAGAACAGCAATGAGGTTGCCAAGCTGGTGAACACCCTGAATACTGTTCCCTCGTTGGGGCAGAGCCCCGGACCAATGGTGGTGTCCAACAGCAGCCCTGTGCACGGCTCCCAGAGATCCAGCACGTCGGAGTCATCATCATCGTCGTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTGTCAAGCCAGCAGT
R:
GATGATGACTCCGACGTGCTG
Band lengths:
357-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]