GgaALTD1000030-1/2 @ galGal4
Alternative 5'ss
Description
NA
Coordinates
chr27:2526387-2541340:+
Coord C1 exon
chr27:2526387-2526455
Coord A exon
NA
Coord C2 exon
chr27:2541038-2541340
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CTCCCCCTCCTTCTCCTTAGCCC
3' ss Score
9.28
Exon sequences
Seq C1 exon
GCACCTCCACAGAGAACGACTGTGCTTTCGAAGCAGACTACGCCATCCCGCCGCTCCCCGTGACCGAAG
Seq A exon
NA
Seq C2 exon
CCCCTCTGAGGAAAGCAAAGTTTGTTGAGAGCCCTCGCATCCCTGAGTCCGAGCTCGGCTCACCAACACTCTCTTCAGCACAGAAACTGGACGTGGATGCGTACTGCCCTGGTAAGCTGCATGCAGAGGTGCTGCATTTGGAGAGGGACAGCAGCTGCGGCCGGGAGGAGCACTGCATGTAGTGCAGCTCTGCTGTATGCTGCTGAATGGGAGCTGCACAGCCCCGTTGCATTGAGCAGGCAGCTCCATGCCTTCATTTCTCACTGCTGCCCATTCACACGTGCTGCATGCCGCCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-4-1,5-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGAAGCAGACTACGCCA
R:
TCCCATTCAGCAGCATACAGC
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]