GgaALTD1000422-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZZ5]
Coordinates
chr16:380198-380778:-
Coord C1 exon
chr16:380751-380778
Coord A exon
chr16:380710-380750
Coord C2 exon
chr16:380198-380375
Length
41 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGG
5' ss Score
0.43
3' ss Seq
ATCTCTTCTCACCCCCACAGGAA
3' ss Score
11.87
Exon sequences
Seq C1 exon
GAGAAGAAGGGTTATGAAGCAGCGCCAG
Seq A exon
GTGAGTGCCAAGGGCAGAACTGTCCCCTGCCAGTGCTTGGG
Seq C2 exon
GAAGTGAACTTTCCATCTGAGTGCTGTGCTGCAGTAGCCAGCCCTGCATGCACGTGTTTGGAGTTTGTGGGTGTGTGTATCTCCGTTTGCTCGACCTCCTGCATCTCCTCGGGCTGACACAGTGTGTGTCTTCAAGTCAAATAAACCCCAGCACTGTGGATTGCTGGTGTGCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004772-7-13,8-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGTTATGAAGCAGCGC
R:
GAGGAGATGCAGGAGGTCGAG
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]