GgaEX1001007 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZZ5]
Coordinates
chr16:380198-380783:-
Coord C1 exon
chr16:380751-380783
Coord A exon
chr16:380561-380593
Coord C2 exon
chr16:380198-380375
Length
33 bp
Sequences
Splice sites
3' ss Seq
CGGCTCTCCCTCCCTTGCAGGCC
3' ss Score
11.36
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAAGGAGAAGAAGGGTTATGAAGCAGCGCCAG
Seq A exon
GCCGCGACGGAGAATCCAGCATATCGGTTACAG
Seq C2 exon
GAAGTGAACTTTCCATCTGAGTGCTGTGCTGCAGTAGCCAGCCCTGCATGCACGTGTTTGGAGTTTGTGGGTGTGTGTATCTCCGTTTGCTCGACCTCCTGCATCTCCTCGGGCTGACACAGTGTGTGTCTTCAAGTCAAATAAACCCCAGCACTGTGGATTGCTGGTGTGCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004772-'7-13,'7-12,9-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGTTATGAAGCAGCGC
R:
GGTCGAGCAAACGGAGATACA
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]