GgaALTD1001452-1/2 @ galGal4
Alternative 5'ss
Description
NA
Coordinates
chr1:178343972-178345902:-
Coord C1 exon
chr1:178345817-178345902
Coord A exon
NA
Coord C2 exon
chr1:178343972-178344473
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTTTGTTTTTCTTCAAACAGCAG
3' ss Score
8.39
Exon sequences
Seq C1 exon
CTTTTGCAGAAGGTAGCAAGTTGATGCAAGAAGAGCAGGCTCCCCACAGGAAGAAAAAATAAAAGGTCTTGGAGCAACTTACTAAG
Seq A exon
NA
Seq C2 exon
CAGGTCTGGAATGGACACAAGTTCTCTGGGAGGATTAGAACTGTCTGAACATACTCCTGACCTACTAGCAAATACCACCATGGCAGCAGGTCTTGCAAATGTAGGCAATACATTTGCTGGTCCAACAAGTTCTTTAGTTTCTAGACCGAGTAAATTCCAGAACTCTACTGTAGAAGATGATGATGATGTAGTTTTTATTGAACCTGTACAAACGCCACAAAATTCTACATCACTGATAGCAGAACAAAGGAACGCTGCATTTGCATTGTCAAAAAATGACGAACTTCAAGGAGATGATTGCAAAATGCTTCCTCCTCCGAAAGACTTGAATTCTCAAAAGGGGAGTATAAGTGAAACTATTATTATTGATGATGAAGAAGATATTGAAACAAATCAAGGACAAGAGAAGAATGCTTCCGGTTTTAATGAGCGAAGACTTCCAGAGTGTAAAAACAGAGCCAACGATATGGATTTCTCAGCTTCCAGTTTTTCAAGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-11-9,12-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.927
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGTAGCAAGTTGATGC
R:
CCTCCCAGAGAACTTGTGTCC
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]