GgaEX1003729 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178334552-178345911:-
Coord C1 exon
chr1:178345787-178345911
Coord A exon
chr1:178343972-178344473
Coord C2 exon
chr1:178334552-178334840
Length
502 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTCTTCAAACAGCAG
3' ss Score
8.39
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCACACAGCTTTTGCAGAAGGTAGCAAGTTGATGCAAGAAGAGCAGGCTCCCCACAGGAAGAAAAAATAAAAGGTCTTGGAGCAACTTACTAAGGTAAACAGATTGCAGTGGATTTCTGGATGG
Seq A exon
CAGGTCTGGAATGGACACAAGTTCTCTGGGAGGATTAGAACTGTCTGAACATACTCCTGACCTACTAGCAAATACCACCATGGCAGCAGGTCTTGCAAATGTAGGCAATACATTTGCTGGTCCAACAAGTTCTTTAGTTTCTAGACCGAGTAAATTCCAGAACTCTACTGTAGAAGATGATGATGATGTAGTTTTTATTGAACCTGTACAAACGCCACAAAATTCTACATCACTGATAGCAGAACAAAGGAACGCTGCATTTGCATTGTCAAAAAATGACGAACTTCAAGGAGATGATTGCAAAATGCTTCCTCCTCCGAAAGACTTGAATTCTCAAAAGGGGAGTATAAGTGAAACTATTATTATTGATGATGAAGAAGATATTGAAACAAATCAAGGACAAGAGAAGAATGCTTCCGGTTTTAATGAGCGAAGACTTCCAGAGTGTAAAAACAGAGCCAACGATATGGATTTCTCAGCTTCCAGTTTTTCAAGAAGTAAG
Seq C2 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_MULTIEX2-7/8=6-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.927 C2=0.473
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAAGAAGAGCAGGCTC
R:
GGAGCGGGTTTGTGTGAGAAT
Band lengths:
357-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]