MmuEX0053918 @ mm9
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57506632-57530197:+
Coord C1 exon
chr14:57506632-57506694
Coord A exon
chr14:57521533-57522389
Coord C2 exon
chr14:57529915-57530197
Length
857 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTTCCCTGAACAGGTT
3' ss Score
11.62
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACCAGAAATTTCGTTCAACCCTATCTGGTGCATCTTTGGCAGAAAGTGAGGAAAACACCATT
Seq A exon
GTTCTTTGGCATGGACACAAGTTCAGTGGGAACGTTAGAACTGACTGATCAAACTCCTGTCTTATTAGGAAGTACAGCCATGGCAACTAGTCTCACGAACGTAGGAAATTCATTTAGTGGCCCACCTAATCCTTTAGTGTCTAGATCTAGTAAGTTTCAGAACTCATCAGTAGAAGATGATGATGACGTTGTTTTTATTGAACCTGTACAACCTCCTCCATCTTCTGCACCTTTGGTTGCTGATCAAAGACCCATAACATTTACATCTTCAAAAAATGAAGAACTACAAGGAAACGATCCCAAAATTCTTCCTTCATCGAAAGAGTTGGCCCCGCAAAAGGGCAGTGTAAGCGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATCAAGGACAAGAGAAGAGTTCCTCAAATTTTATTGAAAGGAGACCTTCTGAAACTAAAAACAGAACTAATGATGTGGATTTCTCCAGTTCCACTTTTTCAAGAAGTAAAGTAAACGCAGGAGTGAGTAACAGTGGTATTACCACAGAGCCAGACTCGGAGATTCAGATTGCTAATGTTACAACCTTAGAAACAGGCGTAAGCTCTGTGAGTGATGGCCAGCTAGAAAGTACTGATGGGAGAGATATGAACTTAATGATTACTCATGTCACATCACTGCACAACACCAGCCTGGGAGATGGCTCCAACGGACTTCAGTCCAGTAACTTTGGTGTGAATATACAAACGTACACCCCATCTCTAACGTCACAGACCAAGGCTGGAGTTGGACCTTTTAATCCTGGTAGGATGAATGTTGCAGGAGATGTATTTCAGAATGGAGAGTCTGCACCTCATCACAATCCTG
Seq C2 exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAACGCAAAGGATCAGCTCACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.982 C2=0.337
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=43.2),PF064679=zf-FCS=PU(28.9=13.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGAAATTTCGTTCAACCCT
R:
TACACATAACACAGAGTTTCTTTGGA
Band lengths:
342-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: