GgaEX1003730 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183390669-183401197:-
Coord C1 exon
chr1:183400858-183401197
Coord A exon
chr1:183400495-183400588
Coord C2 exon
chr1:183390669-183390957
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTTTAACTTCACAGACC
3' ss Score
8.49
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAGAACTCTACTGTAGAAGATGATGATGATGTAGTTTTTATTGAACCTGTACAAACGCCACAAAATTCTACATCACTGATAGCAGAACAAAGGAACGCTGCATTTGCATTGTCAAAAAATGACGAACTTCAAGGAGATGATTGCAAAATGCTTCCTCCTCCGAAAGACTTGAATTCTCAAAAGGGGAGTATAAGTGAAACTATTATTATTGATGATGAAGAAGATATTGAAACAAATCAAGGACAAGAGAAGAATGCTTCCGGTTTTAATGAGCGAAGACTTCCAGAGTGTAAAAACAGAGCCAACGATATGGATTTCTCAGCTTCCAGTTTTTCAAGAA
Seq A exon
ACCAAGACTGGTGTAGGACCTTTCAATCCTGGTAGAATGAATGTGGCTGGCGATGTATTTCAAAATGGAGAATCTGTGACTCATCATAATCCTG
Seq C2 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'1-8,'1-3,3-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.973 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGAAGACTTCCAGAGTG
R:
AAGGCTGGAAGATCTGCTTGG
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]