GgaEX1003730 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178334552-178344473:-
Coord C1 exon
chr1:178343972-178344473
Coord A exon
chr1:178343614-178343707
Coord C2 exon
chr1:178334552-178334840
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTTTAACTTCACAGACC
3' ss Score
8.49
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTCTGGAATGGACACAAGTTCTCTGGGAGGATTAGAACTGTCTGAACATACTCCTGACCTACTAGCAAATACCACCATGGCAGCAGGTCTTGCAAATGTAGGCAATACATTTGCTGGTCCAACAAGTTCTTTAGTTTCTAGACCGAGTAAATTCCAGAACTCTACTGTAGAAGATGATGATGATGTAGTTTTTATTGAACCTGTACAAACGCCACAAAATTCTACATCACTGATAGCAGAACAAAGGAACGCTGCATTTGCATTGTCAAAAAATGACGAACTTCAAGGAGATGATTGCAAAATGCTTCCTCCTCCGAAAGACTTGAATTCTCAAAAGGGGAGTATAAGTGAAACTATTATTATTGATGATGAAGAAGATATTGAAACAAATCAAGGACAAGAGAAGAATGCTTCCGGTTTTAATGAGCGAAGACTTCCAGAGTGTAAAAACAGAGCCAACGATATGGATTTCTCAGCTTCCAGTTTTTCAAGAAGTAAG
Seq A exon
ACCAAGACTGGTGTAGGACCTTTCAATCCTGGTAGAATGAATGTGGCTGGCGATGTATTTCAAAATGGAGAATCTGTGACTCATCATAATCCTG
Seq C2 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_MULTIEX2-8/8=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=1.000 C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGAAGACTTCCAGAGTG
R:
AAGGCTGGAAGATCTGCTTGG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]