DreEX0087944 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21638864-21649295:-
Coord C1 exon
chr9:21649239-21649295
Coord A exon
chr9:21642660-21643500
Coord C2 exon
chr9:21638864-21639149
Length
841 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTTTGTGTCTACAGGTG
3' ss Score
11.12
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCCAGGATTTATGTCAAGGCACAAAAGTGGCGCTCTACCGTCTCCAGCTCTACTCCG
Seq A exon
GTGGTTGCCTAAGCAATGGATGGAGATTTGGAAGCCAGAGCAGATGTTGAGGAGGCATGTACAGTCACAGGGGAGGAGGAGGGTCAAATGGAAACCACGCCCGAAATAGAGCCGTCTCCATCTGCAGAAGAGTCACAGACAGCACCAGACCTGCCCACAGCCTCGGAAGACAATGATGACGATGTGGTATTGGTAGAAGAGCCTCCTGCTCACTCTCAGGGGAAAGTACAGCCCCCCATCTCCACACCTGCAGAAACCCTCGATGCTGCCAAAGACTGTGCGGAGTCGGCTACCACGGCAACAGCTCCCTCCAAATCTCCCAGTCCTCCCTCCTCTGCAGCTACCAGTGGCACAACTGCATCCACCACGGCCAAAAGCCAAAGCGAGCCAATCGTTATTGACGACGAGGAGGATTCAGAGCTCAAGGGCACCGCCTCTTCCTCCGTGCCGCCCCCTGAGGTGGAGGATGCCCTGAGCAGCACAGAGCCTGACTCTGAAATCCAAATTGCCAGTGTTACCACGCTGGGTACGGACTCTTCAGCGGTTGCCATGGATACGTCAACAGCATCGCCACTGGCGCTGTGTGCTCAAGAGGATATAAACCTCATGATCACGAATGTGACATCGCTGAAAGACGGGGATGGTCCAGCGGCGGCCCCTTTGGAGGAACTGGAGGGGGCTGAGAACGGACTGCAGATAAGCAGTGCATTCAGCCTGAACCCAGAGGCCCAGCAGAACCAGGGTACAACCGGCAGACCTTCACCCACGTTCAACCCAGGACGCATTAGTGCCGCGAGCCAGCCTGTGCAGAATGGAGAAACGGGGACACACCAGAGATCTG
Seq C2 exon
ATTCATGGATCTCCCAATCGGCGTCTTTTCCACGTAATCAGAAGCAGCCTGGAGTGGACTCACCATCCCCTGCAGCTCCTCTACCCAAACCTCCCTGCCAGTCCTCAGGATCCCAGCAGCCACCGCGCACCATGAAAGTCACATGCGCCAACTGTAAGAAACCTTTGAAGAAAGGCCAGACTGCGTACCAGCGCAAAGGCTCATCCCACCTGTTCTGCTCAACAACCTGCCTGTCTGCCTTTTCCCATAAGCCCGCTCCCAAAAAGAGCTGCACCATGTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'0-2,'0-1,8-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.978 C2=0.469
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.3=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGATTTATGTCAAGGCAC
R:
ATGGTGCAGCTCTTTTTGGGA
Band lengths:
334-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]