MmuEX0053918 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56886383-56911360:+
Coord C1 exon
chr14:56886383-56886698
Coord A exon
chr14:56902696-56903552
Coord C2 exon
chr14:56911078-56911360
Length
857 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTTCCCTGAACAGGTT
3' ss Score
11.62
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGGGGGGGCCGGTAGGCCCGAGGGCGTGGCCCAGGTCTGACGGACAGCCGCCGTGACTACCTCACCGAGGAGGGTCCTGAAAGAAGGCCGACTGGGCCAATGGAGCCTGCCCGAGGCATTCCGTGCCGCCCACGCCATCAGCCAATGAGCGTGCGGAGGGCGGGGCCTCTCCGGGCCCCGCCGTGCCACCGCCTCCTCTGCCTCCTCCTCACCAGCGCTAAAGCCGGGACTGGACCGAGCGGAGTTGTGCGTGTCGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCTGCAGCCAGAACCCG
Seq A exon
GTTCTTTGGCATGGACACAAGTTCAGTGGGAACGTTAGAACTGACTGATCAAACTCCTGTCTTATTAGGAAGTACAGCCATGGCAACTAGTCTCACGAACGTAGGAAATTCATTTAGTGGCCCACCTAATCCTTTAGTGTCTAGATCTAGTAAGTTTCAGAACTCATCAGTAGAAGATGATGATGACGTTGTTTTTATTGAACCTGTACAACCTCCTCCATCTTCTGCACCTTTGGTTGCTGATCAAAGACCCATAACATTTACATCTTCAAAAAATGAAGAACTACAAGGAAACGATCCCAAAATTCTTCCTTCATCGAAAGAGTTGGCCCCGCAAAAGGGCAGTGTAAGCGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATCAAGGACAAGAGAAGAGTTCCTCAAATTTTATTGAAAGGAGACCTTCTGAAACTAAAAACAGAACTAATGATGTGGATTTCTCCAGTTCCACTTTTTCAAGAAGTAAAGTAAACGCAGGAGTGAGTAACAGTGGTATTACCACAGAGCCAGACTCGGAGATTCAGATTGCTAATGTTACAACCTTAGAAACAGGCGTAAGCTCTGTGAGTGATGGCCAGCTAGAAAGTACTGATGGGAGAGATATGAACTTAATGATTACTCATGTCACATCACTGCACAACACCAGCCTGGGAGATGGCTCCAACGGACTTCAGTCCAGTAACTTTGGTGTGAATATACAAACGTACACCCCATCTCTAACGTCACAGACCAAGGCTGGAGTTGGACCTTTTAATCCTGGTAGGATGAATGTTGCAGGAGATGTATTTCAGAATGGAGAGTCTGCACCTCATCACAATCCTG
Seq C2 exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAACGCAAAGGATCAGCTCACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.982 C2=0.337
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=43.2),PF064679=zf-FCS=PU(28.9=13.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGAAAGAAGGCCGACTG
R:
GTTGGTTCGAGGGCTGGAATA
Band lengths:
357-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types