BtaEX6056647 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36430513-36452910:-
Coord C1 exon
chr12:36452842-36452910
Coord A exon
chr12:36434536-36435392
Coord C2 exon
chr12:36430513-36430798
Length
857 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTCTCCTTAACAGGGT
3' ss Score
11.59
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GACCAGGACTTGAATTCATCCTTACCTAGTGCATCTTTGGCTGAGCGTGAGGAGGACAACACCCCGATT
Seq A exon
GGTCTTTGGCATGGACACAGGTTCAGCAGGAGGATTGGAAGTGACTGATCAGACTCCTGTTCTGTTGGGGAGGACAGCCATGGCAGCTAGTCTCACGGATGTAGGAAATTCATTTAGTGGGCCACCTAATCCTTTAGTGAATAGATCTAATAAATTTCAGAGTTCATCAGTGGAAGACGATGATGATGTTGTGTTTATTGAACCAGTACAACCACCTCCTCCTTGTGCACCAGTGGTGGCTGATCAAAGAACCATAACATTTACATCATCGAAAAATGAAGAGCTGCCAGGAAATGATTCCAAAATTCTTCCTTCCTCAAAAGAATTGGCTTCTCAGAAGGGGAGTGTAAGTGAGACGATTGTCATTGATGATGAGGAGGATATGGAAACAAATCAAGGGCAAGAGAAAAATTCCTCCAGTTTTATTGAACGGAGACCATCTGAGTCTAAAAACAGAACCAATGATGTGGATTTCTCCCCTTCCAGTTTTTCAAGAAGTAAGGTAAATGCAGGAATGGGTAATAGTGGTATCACCACAGAACCAGACTCTGAGATTCAGATCGCTAACGTTACGACCTTAGAAACAGGCGTCGGCTCTGTGAGTGATGGCCAGTTAGAACACACTGACGGGAGAGACATGAACCTGATGATCACACACGTAACATCCCTGCAGAATGCCAGCTTGGGAGATGTCTCTAATGGACTGCAGTCAAGTAATTTTGGTGTTAATATGCAAACATACACCCCGTCTTTAACTTCACAGACCAAGACTGCAGTAGGACCTTTCAATCCTGGTAGAATGAATGTGGCAGGAGACGCATTTCAGAACGGGGAGTCTGCAGCTCATCACAACCCTG
Seq C2 exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATTTTCCAGCCTTCTGCCCAACAGCAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTGCAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCACCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCACAAGCCTGCTCCAAAGAAACTTTGTGTTATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'8-8,'8-4,14-8=AN
Average complexity
A_C1
Mappability confidence:
92%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.982 C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.9=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGACTTGAATTCATCCT
R:
TTCTTTGGAGCAGGCTTGTGA
Band lengths:
334-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]