GgaINT0106886 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178343614-178344473:-
Coord C1 exon
chr1:178343972-178344473
Coord A exon
chr1:178343708-178343971
Coord C2 exon
chr1:178343614-178343707
Length
264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCCCATCTTTAACTTCACAGACC
3' ss Score
8.49
Exon sequences
Seq C1 exon
CAGGTCTGGAATGGACACAAGTTCTCTGGGAGGATTAGAACTGTCTGAACATACTCCTGACCTACTAGCAAATACCACCATGGCAGCAGGTCTTGCAAATGTAGGCAATACATTTGCTGGTCCAACAAGTTCTTTAGTTTCTAGACCGAGTAAATTCCAGAACTCTACTGTAGAAGATGATGATGATGTAGTTTTTATTGAACCTGTACAAACGCCACAAAATTCTACATCACTGATAGCAGAACAAAGGAACGCTGCATTTGCATTGTCAAAAAATGACGAACTTCAAGGAGATGATTGCAAAATGCTTCCTCCTCCGAAAGACTTGAATTCTCAAAAGGGGAGTATAAGTGAAACTATTATTATTGATGATGAAGAAGATATTGAAACAAATCAAGGACAAGAGAAGAATGCTTCCGGTTTTAATGAGCGAAGACTTCCAGAGTGTAAAAACAGAGCCAACGATATGGATTTCTCAGCTTCCAGTTTTTCAAGAAGTAAG
Seq A exon
GTAAATTCAGGAATTGATAATAGTGGTATATCCACAGAACCAGACTCTGACATTCAGATTGCTAATGTAACTACATTAGAAACAGGTGCTATGAGCTCTGTGAGCGATGGTCATGTAGAAAATGATGAAGGGCGTGACATGAACTTAATGATTACGCATGTAACATCATTGCAGAATGCCAACTTGGGAGATGTATCTAACGGACTGCAGTCAAGTAATTTTGGTGTTAATATGCAAACATACACCCCATCTTTAACTTCACAG
Seq C2 exon
ACCAAGACTGGTGTAGGACCTTTCAATCCTGGTAGAATGAATGTGGCTGGCGATGTATTTCAAAATGGAGAATCTGTGACTCATCATAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGAACGCTGCATTTGC
R:
CAGCCACATTCATTCTACCAGGA
Band lengths:
308-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]