HsaEX1044765 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:19959859-20003135:+
Coord C1 exon
chr13:19959859-19960026
Coord A exon
chr13:19993063-19993564
Coord C2 exon
chr13:20002850-20003135
Length
502 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTATCTTCCTAACAGGTT
3' ss Score
12.03
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTTATTCCCTTCTCTGCCTCCTTCTGGCAGAAAGGGTTGGGTTCTCCCACCAGGTTGTGTGTTTTTGATACATTTTTCTTTTTTCCTCCTATCCCAGGACCAAGAATCGCCTTCAGCCCTGTCTGGTGCATCCTTGGCAGAAAGTGAGGAGGAAAACACCCCCATT
Seq A exon
GTTCTTTGGCATGGACACAAGTTCAGTGGGAGGATTAGAATTGACTGATCAGACTCCTGTTTTATTAGGGAGTACGGCCATGGCAACTAGTCTCACGAATGTAGGAAACTCATTTAGTGGTCCAGCTAATCCTTTAGTGTCTAGATCTAATAAGTTTCAGAACTCGTCAGTGGAAGATGATGATGATGTTGTTTTTATCGAACCTGTACAACCTCCCCCACCTTCTGTACCAGTGGTAGCTGATCAAAGAACCATAACATTTACATCATCAAAAAATGAAGAACTACAAGGAAATGATTCCAAAATTACTCCTTCCTCAAAAGAGTTGGCATCTCAGAAGGGAAGTGTAAGTGAGACAATTGTCATTGATGATGAAGAGGACATGGAAACAAATCAAGGGCAAGAGAAAAATTCCTCCAATTTTATTGAACGAAGACCTCCTGAGACTAAAAACAGAACCAATGATGTGGATTTCTCCACTTCCAGTTTTTCAAGAAGTAAG
Seq C2 exon
ATTCTTGGATCTCCCAGTCAGCTTCATTTCCCCGTAATCAGAAACAACCAGGGGTGGACTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATTTTCCAGCCGTCTGTCCAACAGCAGCCTACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTTTACAGAAGGGCCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCTACCACCTGCCTTTCTTCCTTCTCCCACAAGCCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741_MULTIEX3-4/6=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.979 C2=0.339
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.9=13.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTCTCTGCCTCCTTCTG
R:
AGCTGTCTGGCCCTTCTGTAA
Band lengths:
346-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains