GgaALTD1001506-3/5 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88026589-88027517:+
Coord C1 exon
chr1:88026589-88026698
Coord A exon
chr1:88026699-88026703
Coord C2 exon
chr1:88027334-88027517
Length
5 bp
Sequences
Splice sites
5' ss Seq
GGTGTGGTT
5' ss Score
-14.25
3' ss Seq
TTCCCTTTTATTTCTATTAGCTT
3' ss Score
6.87
Exon sequences
Seq C1 exon
AAGTTGCTTCCCTTATACTTTCAAATGTCTTAATGGAAAATGCTTGTTGAAACCAAATCCTGAATGTGATGGGAAAATTGACTGCACAGATGGATCTGATGAAGTGAACT
Seq A exon
GTGGT
Seq C2 exon
CTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221-12-13,13-13,14-13,15-13,16-13-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(21.4=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAATTGACTGCACAGATGG
R:
GACTGTGCATCTTCACCTCCA
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]