GgaINT1002504 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKH4]
Coordinates
chr1:88026589-88027517:+
Coord C1 exon
chr1:88026589-88026701
Coord A exon
chr1:88026702-88027333
Coord C2 exon
chr1:88027334-88027517
Length
632 bp
Sequences
Splice sites
5' ss Seq
GTGGTGTGG
5' ss Score
0.74
3' ss Seq
TTCCCTTTTATTTCTATTAGCTT
3' ss Score
6.87
Exon sequences
Seq C1 exon
AAGTTGCTTCCCTTATACTTTCAAATGTCTTAATGGAAAATGCTTGTTGAAACCAAATCCTGAATGTGATGGGAAAATTGACTGCACAGATGGATCTGATGAAGTGAACTGTG
Seq A exon
GTGTGGTTAACAGTAATTTAAAAATTAGTTAAAGACATAAACGGAGTTAGGAATTGGTGCTATTGTCAAGTATTACTGTATTAAAAGTTGATAACATCAGATGTGAGTTTAAAAAAAAATTCCTGGTAACATTTGCATGAAAACGTACATCTTAAATTTTGTACCTTCTCATTTTAAACTTACTGATCTATTCTGTCTGTGAGTATTTATTTCAAGCAATGCGTGTTTCCAGGTTGTTAAACTGGTAGATCTTGTTGCTTGTTTGATCTGAATGAAATACAAAGAGTCAGGGAGCAGTGTATGTAAGTAGGGGAAGAATAAGATCTTATTCCAGTAAATTGTTGAAAACAGCCCAGTTTAGGATTGTGCTTAAATGTTTTTCTGGGTTACTAACCTCTTAGGGAATCTGTAAGGGGGACGACAGGCAATGTGTGGTTTATTCCTTACCCACCCATCGAGTGAAAATGAGCAAGTACTCATATCATTTTTCCAACTCTAAGAAAAATACTTCTTCCCCCCGCCCTGCGATGACTTTGTGGTCTGTAAATAAATGTTAGTTTATGTATTAATCATAAGCAATTAAAATAACCTTGTGTTCTCCTTTGCTACTTTTTCCCTTTTATTTCTATTAG
Seq C2 exon
CTTGTGGAAGAAATCTGTTTAAGAAAAACAGGATTGTTGGAGGTGAAGATGCACAGTCTGGAAAGTGGCCTTGGCAAGCAAGTTTACAAATTGGAGCACATGGACATGTCTGTGGTGCATCTGTTATTTCCAAGAGGTGGCTTTTATCTGCTGCCCATTGCTTTCTGGATTCCGATTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019221:ENSGALT00000024826:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
NA
C2:
PF0008921=Trypsin=PU(21.4=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGCTTCCCTTATACTTTCAAA
R:
ATGGAATCGGAATCCAGAAAGCA
Band lengths:
294-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]