DreINT0021353 @ danRer10
Intron Retention
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21700496-21702526:-
Coord C1 exon
chr24:21702410-21702526
Coord A exon
chr24:21700695-21702409
Coord C2 exon
chr24:21700496-21700694
Length
1715 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CATTTCCGTATGATTTGTAGCCT
3' ss Score
4.84
Exon sequences
Seq C1 exon
AGACTAGCTGTTCTGGAGTCAGTTATCAGTGTGACAATGGAGCCTGCATTCTTAAGAAAAATGCAAAATGTGATGGCTTTCCTGACTGCTTTGACCAGAGCGATGAAAAGAACTGTG
Seq A exon
GTAAGTTTTACTGTGGTAACATCCATTCAGATAATCACTCTTGATACTGGTTTGCAGACATAAAATGAAAGAGAACTGATTTTTCATAGTTTTATGTTTGTTTTAGAGGTATTTTATAATTAATTAAATTCCATTTAAACTAAAAAAATGTCATAGGAACCAAACAATGAGCATTAAAGTAGCTTTAAATCAGATGTAAATCATAAAATTAAAGACACTTGGAGAAATCGTTCACTTATTTTTATATATATAAATGTAAAATCTGTTTCATGGTTCACATTTATTATTCTTACTTTGTAAACAAATTGCATCCTAATGTCATATTGCTGCACATCCTTTAAAGAGTGTCCAAAAGTTTAATTAAGGGAACCAGTGTTTCATGAATGACTGACTAACCACTCAACCCAAAATAGCCTTCATGGTCCCATGATGATGATATTGCTGCTTTTATCTTTTGCTTTTTAAGGTTTCTTGAACTTTGTATAATTGTTGACTTGATCATTTGATCATGATTCATTCTCTTGTACACTCAAATACACAAATGTACTGTACACAGTATCTGTCACAAATCTGGAATAATAATGATTTTTATTGTATGTTGGAAGTCTCTTATGCTCACCAAGGGTTAGGTGCATTTATTTGACCAAACTTACAGTGATGGTAATATGGTGAAATATTGCAATTTACAATATCTCTGTTTATTTAGTGACCACATACTGTACTGATTTAACGCTCAGATAGATAGATGGAAGGATGGATAAATAGATAGACAGACAGACAGATGGATCGATGAACGGACAGACAGACGGGCGTATGGATGGATGGACCGATAGACCAATGGATGGACAGATAGATGGACGGACGGATAAACAGACAGACAGACTGACAGACAGACAAAATAATGGATAGATGGACAGACGGACAAGGTAGGTGGATGTATGGATGGATGGATAGACGGATGAACAGACGGATGGATGGATGGATGGATGGACAGATAGATGAATGGATGGACGGATAGACTGATGGATAGACAGACAGACAGACAGACAGACAGACAGACGGGTGGATGGATGGATGGATGGATGGATAGATGGATGGACGGACGGACGGACAGATGTACAGACAAAAGGATGGATAGACGGACGGACGGGTAGGTAGGTGGATGTATGAATGGATAGACGGACGAACAGACACGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACGGACGGACAACTAGACAGATAGTTGGATGATTGGATGGATGGATGGATAGATAGATACAGTAGATAGCTAGATAGATAGACAGACAGACAGACAGACAGAAGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACGAACAGACGGGTAGGTGGTTGGATAGATGGATGGATAGACAGACAGACGGACTACCAGACAGACAAATAGTTGGATAGATGGATGGATAGACAGACAGACGGACTACCAGACAGACAAATAGTTGAATGAATGGATGGATAGATGGATGGATGGATGGATTGATAGATAGAGACGGACAGATGGACAGACAGACAGATTGAAAGATAGACAGACAGAGACAGACAGACAGGCATACAGACAGACAGACATACAGACAAAACAGTCTCAATCTCACACTTAATCTCACCTTTGTCACACACACATGCTTTTGTCTTACATTTCCGTATGATTTGTAG
Seq C2 exon
CCTGTGGCAAACCCACCCATGTAAAACGTGTATTAGATGGCACCAGCCCTCAGCAGCGTATTGTGGGTGGAGTCAATGCTGTGGAGGGGGAGTGGCCATGGCAGGTCAGCATGCATTTTTCTGGTCAGCTGTATTGTGGAGCTTCAGTCCTCTCTGATGTGTGGCTTATTTCCGCAGCACACTGTTACAGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161:ENSDART00000129558:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=68.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTAGCTGTTCTGGAGTCAGT
R:
TTGCTGTAACAGTGTGCTGCG
Band lengths:
310-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]