HsaINT0169766 @ hg19
Intron Retention
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111793143-111794339:+
Coord C1 exon
chr3:111793143-111793259
Coord A exon
chr3:111793260-111794167
Coord C2 exon
chr3:111794168-111794339
Length
908 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ATGCCCTTTCTCCACCAAAGCCT
3' ss Score
4.4
Exon sequences
Seq C1 exon
GTATTCCATGCAACAACAGAACTTTTAAGTGTGGCAATGATATTTGCTTTAGGAAACAAAATGCAAAATGTGATGGGACAGTGGATTGTCCAGATGGAAGTGATGAAGAAGGCTGCA
Seq A exon
GTAAGTAGAAATTCATTCCTTTGGGTTCCTGTATTCCCTCTTCAGTTTACCTGTTTGTTATATTTTCATTCCCTTCTTGGTGTATTTCCCTTGATCGAGGTTGCCATAGCCAAAACAAGAATAGTAACTATTGACAAACTGAGTCTGAAATTGTTTCTCAGAAATAAAAACTCTGGAATGGATTCTGTCTTCTTGATAACAGCATTAATGAATTAAATTTTTAAAATGAGAACTTTCACTTTTTAATAATTTTAATCAAGGGAGAAGATCTTAAATAAAAACCTTGTGAGAAAATAAATAGAAACTGGAACGCAGTGGATGACCTGTTAATGCCTTATGTTACTAACAATATCAAGTGCTGTTTCTTTAGGCCTGACTCAATAACTAATCTCCCACATGCTCCTATTAGTCATGTGGCTACTACTTGGCCATGTGGCAACATGTAAATTATACATCTTTACCAATACTATTTACACTAGCAAACAATTGCTCTGATAACTAGTTTTCCCTGTAGGTTTTCATTTGTCCAGGTCTTATAAATCTTTTCCCCAATCCTTTCTGTCACATCAGCACAACTTCAAAGAAATTCTCAATTCATTTACATTCCTCTTTACCTGACAATCTAAATCCATAGGCAGCTGTTTGTGTCAGTTCAGCTGTTACAGCAGGTCCCCCTCCTCCTCTCATCTGCGTTGTGGTATAGAGACTGTGTCAGGGCATGCTTCAGGAAGGAGGGAGTGGTTTGTTTGTATTGGTTTCAGACAGACTCACATGTTCTCTGTCCTCTAGATAAGGAGATTTCAAATTGCTACCTAGTGAGTCAGTTCCCAGCCAGCACTAAAACTGGCTTAACTTCTAGTTTTTCTTCCAAGTCTACCTTTAAATCACATGCCCTTTCTCCACCAAAG
Seq C2 exon
CCTGCAGCAGGAGTTCCTCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGAGGGGGGTTGGCCGTGGCAGGTCAGCCTCCACTTTGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTTTCTGCAGCCCACTGTTTTCATGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-TMPRSS7:NM_001042575:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGCAACAACAGAACTTT
R:
CTGTTTCCATGAAAACAGTGGGC
Band lengths:
286-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)